·Paper Publications
- [1] Pengshuo Yang, Wei Zheng, Kang Ning*, Yang Zhang*. Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 2021, 118 (49): e2110828118. doi: 10.1073/pnas.2110828118. (SCI impact factor 12.779) .
- [2] Mo Zhu1, Kai Kang1, Kang Ning*. Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual-indexing and parallel computation. Briefings in Bioinformatics, 2021, 22 (1): 557-567. doi: 10.1093/bib/bbaa009. (SCI impact factor 13.994) .
- [3] Yan Zhao1,Mingyue Cheng1, Liang Zou, Luxu Yin, Xue Zhu, Yuguo Zha , Lei Zhang*, Kang Ning*, Jinxiang Han*. Hidden link in gut-joint axis: gut microbes promote rheumatoid arthritis at early stage by enhancing ascorbate degradation. Gut , 2022, 71 (5): 1041-1043. doi: 10.1136/gutjnl-2021-325209..
- [4] Yuguo Zha, Kang Ning*. Ontology-aware Neural Network: A general framework for pattern mining from microbiome data. Briefings in Bioinformatics, 2022, 23 (2): bbac005. doi: 10.1093/bib/bbac005. (SCI impact factor 13.994) .
- [5] Lei Ji1, Lu Zhang1, Zhi Wang*, Xue Zhu, Kang Ning*. High biodiversity and distinct assembly patterns of microbial communities in groundwater compared with surface water. Science of the Total Environment, 2022, 834: 155345. doi: 10.1016/j.scitotenv.2022.155345. .
- [6] Yuguo Zha1, Hui Chong1, Hao Qiu, Kai Kang, Yuzheng Dun, Zhixue Chen, Xuefeng Cui*, Kang Ning*. Ontology-Aware Deep Learning Enables Ultrafast and Interpretable Source Tracking among Sub-Million Microbial Community Samples from Hundreds of Niches. Genome Medicine, 2022, 14 (1): 43. doi: 10.1186/s13073-022-01047-5. (SCI impact factor 15.266).
- [7] Lei Ji, Lu Zhang, Zhi Wang*, Xue Zhu, Huimin Wei, Maozhen Han, Kang Ning* . Is rice-crayfish co-culture a better aquaculture model: from the perspective of antibiotic resistome profiles. Environmental Pollution, 2022, 292 (Pt B): 118450. doi: 10.1016/j.envpol.2021.118450. (SCI impact factor 9.988).
- [8] Lu Zhang1, Lei Ji1, Kang Ning*, Zhi Wang*. Linkage and driving mechanisms of antibiotic resistome in surface-groundwater and their responses to the land use and seasonal variation. Water Research, 2022, 215: 118279. doi: 10.1016/j.watres.2022.118279..
- [9] Pengshuo Yang, Shiguang Hao, Maozhen Han, Junjie Xu, Shaojun Yu, Chaoyun Chen, Houjin Zhan*, Kang Ning*. Analysis of Antibiotic Resistance Genes Reveals Its Important Role in Influencing the Community Structure of Ocean Microbiome. Science of the Total Environment, 2022, 823: 153731. doi: 10.1016/j.scitotenv.2022.153731..
- [10] Chaofang Zhong1, Chaoyun Chen 1, Xi Gao, Chongyang Tan, Hong Bai*, Kang Ning*. Multi-omics profiling reveals comprehensive microbe-plant-metabolite regulation patterns for medicinal plant Glycyrrhiza uralensis Fisch. Plant Biotechnology Journal, 2022, accepted. (SCI impact factor 13.263).